rs238039022 SNP Detail

Summary

• ID
  rs238039022
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136857270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCATAAAG AGGTTGAATA GTTTTCCTAC
  GTTAGAAACA TCCCTTaggt tgtagaatgg agagcagata tggagagagt aggagatgaa
  tgggattggg gtagataatg taaaattcac tactactact actactacta ctactactac
  W
  acAAATGAAA TATCACTTTG GCTGGAAGTT CCAAGATCTG AAAGGAGGTT TTAACCCAAG
  TGGCCGCATG AATCATAAAG TGGTCACAGG ATTGGCTTCA ATGAGCAATG ACTAACAATT
  CTGGGAGCAA TGTGGGTCTA ATCAGATACC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320975039	CHEV_3_136814473	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238039022					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136857270 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	1214 bp upstream
Rr585922	regulatory region 585922	518 bp distal
Rr585923	regulatory region 585923	1802 bp proximal