rs237917972 SNP Detail

Summary

• ID
  rs237917972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTGATT AAGACCCACG
  GGGTGGGATT TACTGTGTAT TGTGCCTGTT AGTTCTGTAC ACACTCGGGT CTAACAAGTA
  TCTGTTACTT AGGAAAGAGG AGTGGCTAAA AGCCAAGGCG ATCGTATTCC AAATTTGGAC
  CACATCCCAA ATCTTGTTCA GTGCAAGATG TCAGCAGGTA AGGTCATTGC TACCAAGTCT
  Y
  ATGATCCGAG TTCCATCCTG GAATCCACAT GCTAGGAGAG GGATGACTTC TTCAAGTCGT
  CTTCTGACCA CTAGATACTG GCTGTGGAGC ATGCCCTCTC CCCATTAAAG AAATACAATG
  TATTAATAAT AATAATGATG ATGATGTCTT GTTCAGGTTC CCAAAGAGTC AAGGAAACAG
  CTAAGTCAGG TTGTTTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928124	CHEV_6_119428248	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237917972					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	638 bp proximal
Fbxl14	F-box and leucine-rich repeat protein 14	1438 bp upstream
Rr637690	regulatory region 637690	within coordinates
Rr637691	regulatory region 637691	948 bp proximal
Tssr58502	transcription start site region 58502	1250 bp upstream
Tssr58503	transcription start site region 58503	1274 bp upstream
Tssr58504	transcription start site region 58504	1301 bp upstream
Tssr58505	transcription start site region 58505	1515 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron