rs237877978 SNP Detail

Summary

• ID
  rs237877978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32587240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCCAT CTTCATCTCC
  GTCCTTAGCC ATTTGCTTCT GTGGCAGAAT AAACCTTGCC AATTGCTCCA TCCTACAGAA
  GTTCCCAAGC TTTGCTGTGC CCCTTCTCTG CCTCAAATGT GCTTCTCCAT GTAATTCACA
  TCTGATTCTA GACATAATGA AAATGCCCTC CTCCATCGGG TCCTGTGGCG ATTCTTACTG
  Y
  GTTTTTGTTG TTGTTGTTTT TAAGATTTAT TTATTTACCT TCTTATTTGC TTATTTATTT
  ATTTATATGA GTACACTGTA GCTGTCTTCA GACCCACCAG AAGAGGGCAT CGGATCCCAT
  TACAGGTGGT GTGAGCCACC ATGTGGTAGC TGGGAATTGA ACTCTGGACT TCTGGAAGAG
  TAGTCAGTGC TCTTAACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321072257	CHEV_4_32674215	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237877978					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32587240 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	1132 bp downstream
Rr398195	regulatory region 398195	1076 bp upstream
Rr590021	regulatory region 590021	171 bp distal
Rr590022	regulatory region 590022	431 bp distal
Rr590023	regulatory region 590023	93 bp proximal
Rr590024	regulatory region 590024	417 bp proximal
Rr590025	regulatory region 590025	1001 bp proximal