rs237860541 SNP Detail

Summary

• ID
  rs237860541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62419527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGAA GAAGGTGTCA
  AATGCCCTGG AACTGGAATT TCAGACATTT GTGAGCTGTC ACATGGGTGC TGGGAATCGA
  ACCTGGGTCC TCTGGAAGAA CAGCAGTGCT ATTAACTTCT GGGCCATCTC TCCAGCCCAT
  GACCCTTTTA CAATTATTAG AAAATGGTGC CCTTGTTTAA GAAACCCATA TTTATATTTG
  M
  GTATGCTTGA CTTTCCTCAG AGTCCTTCTT TCCCCCCTAA CCCTCATGCT TAATCCTGCA
  TTAAAATGTT ATTAATAAAA TTTCCAACTT GGCTTCATTT AAAAAAATTA CTAGTAATGT
  CAAAAAAGAG AAAGGTTCCT GGAGACTCTG ACCAACAACA TAACTGGTGA GGAGCTGGTG
  GAACCAGAGA GGGGCTGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361714267	MGP_WTSI_4_62162324	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237860541					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714267	MGP_WTSI_4_62162324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62419527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			626 bp proximal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			68 bp distal
Rr593325	regulatory region 593325			142 bp proximal
Rr593326	regulatory region 593326			976 bp proximal
Tssr42008	transcription start site region 42008			886 bp downstream
Tssr42009	transcription start site region 42009			910 bp downstream
Tssr42010	transcription start site region 42010			943 bp downstream