rs237822397 SNP Detail

Summary

• ID
  rs237822397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGATA TCTTGCTAGT
  GCCGTTGCAC TTTCTGGTAC CTACGTACTG TTTAAAACCA TTTCCACACA CTGGGCCCTG
  ACCAGAGTCA CTATCTTCTC ATAATGGTTC AGGAAAGCAA ATATTTAGCC TTATAAATTC
  AGGAAAGTAT TTGATAATGT GAGTTGGACT TTCTAACTAG AATGCAGAAT AAGTTGGTAG
  Y
  GTAGAGCCTG ATAACCCGGT GCCTCTTCAT CTTTACGTAT TGCATACTAA CTCAACAATA
  CTTTTATCTG AACTTGGTTA TGTTAATTTA ACAATTGTAT TTCAAAGCCT ATCAATATCC
  ACATTTTCAA ATATCTATAC TTTTAATCAT TTGGGTATCA TTAACTACTG ATTATTGTGA
  GTGTGCTATG TACTATGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137018	MGP_WTSI_3_60278456	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237822397					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137018	MGP_WTSI_3_60278456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381955 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr577397	regulatory region 577397	1445 bp distal
Rr577398	regulatory region 577398	1054 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29250	transcription start site region 29250	1926 bp downstream
Tssr29251	transcription start site region 29251	1868 bp downstream
Tssr29252	transcription start site region 29252	1847 bp downstream
Tssr29253	transcription start site region 29253	1793 bp downstream
Tssr29254	transcription start site region 29254	1748 bp downstream
Tssr29255	transcription start site region 29255	1728 bp downstream
Tssr29256	transcription start site region 29256	1718 bp downstream
Tssr29257	transcription start site region 29257	1697 bp downstream
Tssr29258	transcription start site region 29258	1451 bp downstream
Tssr29259	transcription start site region 29259	1406 bp downstream
Tssr29260	transcription start site region 29260	875 bp upstream
Tssr29261	transcription start site region 29261	1395 bp upstream
Tssr29262	transcription start site region 29262	1484 bp upstream