rs237790421 SNP Detail

Summary

• ID
  rs237790421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34725321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA AAGCAAAGTC TCTGAACTGA
  Y
  GAGGTCAGAC TCAAGCTCAT AGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325795197	CHEV_19_34822411	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237790421					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34725321 () rs orientation: forward

Symbol	Name	Function Class
Rr546785	regulatory region 546785	643 bp distal
Rr546786	regulatory region 546786	204 bp distal
Rr546787	regulatory region 546787	151 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	632 bp upstream
Tssr156164	transcription start site region 156164	1608 bp downstream
Tssr159005	transcription start site region 159005	806 bp upstream
Tssr159006	transcription start site region 159006	735 bp upstream
Tssr159007	transcription start site region 159007	702 bp upstream
Tssr159008	transcription start site region 159008	670 bp upstream
Tssr159009	transcription start site region 159009	608 bp upstream
Tssr159010	transcription start site region 159010	586 bp upstream
Tssr159011	transcription start site region 159011	472 bp upstream
Tssr159012	transcription start site region 159012	453 bp upstream
Tssr159013	transcription start site region 159013	427 bp upstream