rs237784525 SNP Detail

Summary

• ID
  rs237784525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88737383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGTTTA GGCTGTGAAA
  CTCAGAAATG GACACTGATT TCTCTGGGCT GTAGGTATGA TCTTTGTGGA CCTTCATGTG
  GGCTCTGGCA ATTAATCTTG GGACTTTTGT AAGAGCAACA AGTGCTCCTA ACTGTTGAGC
  AAACACTTTA GTTCCCTGAG TATTTTTTAT TTGATTGTTC GATTTTTTTT TTTTTAAACA
  W
  GAATGTCATG TAGCTCAGGC TGGCCTCAAA ATGGCTATAC AACCAAAAAC TGGCCTTGAA
  TTTTTTGTTT TAAATATTTC AAAAACCATA TTACTATGTG TGCATGTGCG TGTGTGTGAC
  ATGCCATGAG TGTATGGGTA AAGGTAGATG ACAGCTCTGT GGAGTCCTTT TTCTCCTTCC
  ACCTTCATGT GGGCTCTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358802512	MGP_WTSI_3_88633998	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237784525					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358802512	MGP_WTSI_3_88633998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88737383 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	1143 bp upstream
Rr375322	regulatory region 375322	239 bp upstream
Rr579901	regulatory region 579901	850 bp proximal
Rr579902	regulatory region 579902	1372 bp proximal
Rr579903	regulatory region 579903	1497 bp proximal