rs237754193 SNP Detail

Summary

• ID
  rs237754193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10975027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACACCAC AGAGCATCTG
  TGAAGCAGGA ACAGGCACCT GGTTTCCTTA GCACTCCACT CCACTGCGTG AAATGAACAG
  TCAGCACAAA GCAGTCTCTG GGTTGGGTTG GGTTGGGTTT TGAGACAAGA GTCTCATTGA
  TCCCAGGTAG GCCTTGAACA CAAATGCAGA CAACGATGAC CTTGAACTTC TAATTCTTCT
  Y
  CACCTCACCT CTCAGGTGCT GGAATTACAA CAGGCCATTA CTTTTTTTTT TTTTTTTTTT
  TTTATGCTGG AGATAAAATA TAAGGCTTCC TGCATGCTAG CAAACACTCT ACCACCGAGC
  CACACTCCAC CCCCACCCCC ACAAATGCCT CTTTGGATTA AAGAGGACAG CACATCTGTA
  ACTAGTGAAG ACATCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360586796	MGP_WTSI_4_10902174	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	C	T	T	C	C	C	T	T	C	C	T	C	C	T	T	C	T	C	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237754193					SNP	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	C	T	T	C	C	C	T	T	C	C	T	C	C	T	T	C	T	C	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360586796	MGP_WTSI_4_10902174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10975027 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	1286 bp distal
Rr588839	regulatory region 588839	1185 bp distal
Rr588840	regulatory region 588840	9 bp distal
Rr588841	regulatory region 588841	377 bp proximal
Rr588842	regulatory region 588842	1135 bp proximal
Rr588843	regulatory region 588843	1717 bp proximal