rs237753904 SNP Detail

Summary

• ID
  rs237753904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33969693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCCCAC TCCCTTTTGT
  GTGTCGCGCC CGCGTTGGCC ATGATAGCTT TATTAAATGG TGTGACCCGA CCTAGTTCTT
  GCACGCGGGG CACCATCTCC TAATCAAAAC CACAAAGCAG CTGAGCGGGC TGTGAAAAGA
  AATCGAGAGC TGCATCTTAA ATACCAGATT AACTGCTGTA GTTGGGGAAG GGGGGGGGGG
  R
  GGGGATGACA GGGGTGGGCG TGGCTAGAAC AAGCCCAGCC CTTCTTTAGA GTAATGGGAG
  GTGCTGCCGT CAGCGGTCAA AGATCAAAGG GTCCACCATG CTGTCTTTAG AACATAGTTC
  TAGCTCTTGG GACAAGAGGC GTGGCAGAGA ATGGCCATGT ACACACAGCA GGTTTTAGGA
  CTAAGCAAGG AGAATTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C57BL/6J	CE/J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367908411	MGP_WTSI_6_33942758	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C57BL/6J	CE/J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237753904					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367908411	MGP_WTSI_6_33942758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33969693 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	341 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	586 bp distal
Rr628236	regulatory region 628236	within coordinates
Tssr60221	transcription start site region 60221	549 bp upstream
Tssr60222	transcription start site region 60222	382 bp upstream
Tssr60223	transcription start site region 60223	338 bp upstream