rs237742023 SNP Detail

Summary

• ID
  rs237742023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:90647537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTTAA AAGAACACAT
  TTCTGTTCTT TCCCGCTGGA GGTAACTCCC CAGATCCTCT ACAGACAATG CGATTTCATC
  CTGATAAACA AGATAATTTT TTTTTAAATG ATCCTCTTCC AGAACCATTA TTAAGCTAAG
  TCAAAAGTTA ACTGAAGCAA ATTTTACTGA GATTCAGAAG CTGGCCCTGG ATGTGGCTCA
  Y
  ATCCACGAGG AGTGTTGCCA AGGAAACTCG CTGGAGTGTC TGCAGGATGG GGTAGGAGTC
  TCCCTCTCTC CCTTTTTGTC TCAATTAATG TTTCACTATG CCTGGCTTGG CTGGGGTGCA
  GTGAACTTAC AGACTTTCGA AGAGTAAAAT TTGAGCTACG TCATGATTGC TTTGGGGTCT
  CACCTCAGGC ATTAGCAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365837335	MGP_WTSI_5_90928704	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237742023					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365837335	MGP_WTSI_5_90928704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90647537 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	Coding-Synonymous
Gm43449	predicted gene 43449	within coordinates
Rr614365	regulatory region 614365	1117 bp proximal
Rr614366	regulatory region 614366	1245 bp proximal
Tssr47135	transcription start site region 47135	1363 bp downstream
Tssr47136	transcription start site region 47136	37 bp downstream
Tssr47137	transcription start site region 47137	within coordinates
Tssr47138	transcription start site region 47138	722 bp upstream
Tssr47139	transcription start site region 47139	1723 bp upstream
Tssr47140	transcription start site region 47140	1752 bp upstream
Tssr47141	transcription start site region 47141	1766 bp upstream
Tssr47142	transcription start site region 47142	1854 bp upstream
Tssr51782	transcription start site region 51782	1366 bp upstream
Tssr51783	transcription start site region 51783	1311 bp upstream
Tssr51784	transcription start site region 51784	1841 bp downstream