rs237694522 SNP Detail

Summary

• ID
  rs237694522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:63313475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCCCG TAGCAAATCT
  CATCCACTAG AGAGAGTCCA TTAACAATTT CAGATTATCA GCCCCTTCTT TTTGAGAATG
  TATACGTTCA TGTACTTGCT TCATGTGCGT GTTTTACATA AGTGTGGGTG TTTATTTTTC
  GTTCTTTTCA CTTAATACAT CGAGGACTTT TTCTGTATGG TCTGAAACCA AAGCGTTACA
  Y
  GCTAGCTAGA AACTCGTTGA AAATTTGATT ACGTATCACT GCAGTAGCCA GCCCATTGGC
  TGGAAGAAAG CTGAAATCAG GGTAGCAACC GGTTTCTATA ACATATTGTT TACTCTTCCT
  AATAATTTGG GGCACTGTTT TTCATACCTG TTGGTCAATT GAGAGACTGA TGTAGTTATT
  CATGACTAAC ATTAAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349862169	MGP_WTSI_1_63320890	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237694522					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349862169	MGP_WTSI_1_63320890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63313475 () rs orientation: forward

Symbol	Name	Function Class
Gm11608	predicted gene 11608	1060 bp upstream
Gm56068	predicted gene, 56068	953 bp upstream
Rr412159	regulatory region 412159	1169 bp distal
Rr412160	regulatory region 412160	1041 bp distal
Rr412161	regulatory region 412161	within coordinates
Tssr7063	transcription start site region 7063	1086 bp downstream
Tssr7064	transcription start site region 7064	1041 bp downstream
Tssr11889	transcription start site region 11889	1205 bp upstream
Tssr11890	transcription start site region 11890	1180 bp upstream
Zdbf2	zinc finger, DBF-type containing 2	Intron
Zdbf2linc	Zdbf2 associated long non-coding RNA	within coordinates