rs237641465 SNP Detail

Summary

• ID
  rs237641465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135748105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAGAAGA GTGAATGGGG TCCCTGACTG
  GAAATTCTGA TGGTGATTAA CACTTATAAA GAGCACTTGG GTCTAGCTGG TATTTCAGGA
  AGAAACTAGA GAAGGGACAG GTCGAGCAGA GAACTCCTCC AAAGTCCCGA GCTGGTGCTG
  R
  CTAGGAACCT AGATTGCATG TGTAAGTCCG CTCGCTGTCT CCCTCCACCA CTTCCTCTTC
  CACTCAGCTC GCTGGACACT TCACCTTTTA GGAACCTCAG GCCCAGGCTA GAATGCTGAC
  AAGCCATGTC ACACCCTTTG GTGTTTTCGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353736	CHEV_4_135576709	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237641465					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135748105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	152 bp proximal
Eloa	elongin A	Intron
Gm68304	predicted gene, 68304	1207 bp upstream
Rr398604	regulatory region 398604	877 bp upstream
Rr602239	regulatory region 602239	within coordinates
Rr602240	regulatory region 602240	959 bp proximal
Rr602241	regulatory region 602241	1218 bp proximal
Tssr44023	transcription start site region 44023	835 bp downstream
Tssr44024	transcription start site region 44024	891 bp downstream
Tssr44025	transcription start site region 44025	928 bp downstream