rs237579328 SNP Detail

Summary

• ID
  rs237579328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69552379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCCACTG TGTGGCATCC
  TAGATTTAAT TTTTACAATG GAATTCCTTT TTGTTTGTTT CTGGCTTTAA AAGATCGATT
  TCTCTCACAA ATTAAGATCT TAGGTGAATG AGCCCGATAG GAGGCATTTC TGCTCCATGT
  AGTTATTCTG GGATCTAAAT TCCTTCCATT ATGTTATTCT AATGCCTGCC AGTTCCTTGT
  Y
  TGTGGATGAT TAGAATATAT TGGCAAATGA AGAAAATAAG AGGCAATGTC TTAAAGCCTA
  GAGCAGCATG CCACTTTGTC TCAAATTTCA TCCTCGAAAA TTAAATCACA TGGCCAAGGG
  CTGGCGAGAT GGCTCAGCCA TTAGGAGCAC TTGTGGCTCT TGAAGGAAGA CCCATATTGA
  GTGTCTCGTA ATGCTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377078	MGP_WTSI_2_69560092	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237579328					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377078	MGP_WTSI_2_69560092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69552379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11715	CpG island 11715	558 bp proximal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	773 bp upstream
Rr397018	regulatory region 397018	572 bp upstream
Rr558457	regulatory region 558457	280 bp proximal
Rr558458	regulatory region 558458	738 bp proximal
Rr558459	regulatory region 558459	1069 bp proximal
Tssr18132	transcription start site region 18132	762 bp upstream
Tssr18133	transcription start site region 18133	825 bp upstream
Tssr18134	transcription start site region 18134	1004 bp upstream
Tssr18135	transcription start site region 18135	1036 bp upstream
Tssr18136	transcription start site region 18136	1213 bp upstream
Tssr24445	transcription start site region 24445	712 bp downstream