rs237576669 SNP Detail

Summary

• ID
  rs237576669
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGATTCT GAAACTGTAC
  CTTGCCAGCA GCCAGAGTGC AGACTCTGAC TAGTGTGCTT GGTGGTGGTG GAGTTGTTGT
  CGGTGGTGGT GGGGAGGTGG TGGTGATGGT GGTAGTGGTA TGAAATCTTC TGGGGTCTCG
  GAAGCTCTGC CTTTATTTTT TAAAACCTAG GGCAGTGGAG TTCCCCATTT ACTGCTGCCT
  K
  CCTTCCTTTT TTCTTGCTGT AAAAAGACAT CATAACCAAG GCAGCTTACA GTAAAAAGAG
  TTTATTGGGG CTTATAGTTT CAGACATTAG AGTCCATGTC CATCGTGGCA GGGAACATGG
  TAGCAGGCAG GCAGACATGG CGCTGGAATA ATAGCTGAGA GCTCACTTCT TGATCTACAA
  ACACAAGGCA GAGGGAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914845	CHEV_6_114788512	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237576669					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			46 bp downstream
Rr636840	regulatory region 636840			434 bp proximal
Rr636841	regulatory region 636841			1785 bp proximal