rs237540345 SNP Detail

Summary

• ID
  rs237540345
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCA CAAACTGCAG AACAGAAAAG
  M
  AAAGGGTTCA GAGGATAACT GCTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss916431449	MGP_WTSI_3_129681221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	A	A	A	C	C	A	A	C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs237540345					SNP	C	C	C	C	C	C	C	A	A	A	C	C	A	A	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916431449	MGP_WTSI_3_129681221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			974 bp distal
Rr585060	regulatory region 585060			440 bp distal
Rr585061	regulatory region 585061			223 bp proximal
Rr585062	regulatory region 585062			615 bp proximal
Rr585063	regulatory region 585063			1226 bp proximal