rs237528427 SNP Detail

Summary

• ID
  rs237528427
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141449357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAACAA ACAACAACCA
  GCAATTAATC AATCCTCTAA AAAGTCAAAT CTCCCCCAGC CCCCCAAACT CCCTGGTCCT
  AGCTTGCCCC TGCTACCTGT ATGAGGAGGC TGACCAACAG GAATGGGGTC CTAGGTTTTT
  GTGGGTTAAT TTTTCTGTGG AAATTGGGGG AACTGTTTAT TCCCAACTTT TGCCAGACCG
  A
  GTATGTGAGT GACACCTCCT TCCCTAAAAT AGATCCTTCC AGAAAGAGCT GCATGCCAAG
  GTTCTAAAGT TCACATTGTG TGAAGGAATG GTACTTCTGA ACACAATATT GACACGCAGA
  GTTTACCGTA AGTCAGGACA GAACAGGCAG TCGTTGGGCA ACAGTTTTTG GAACTATTTC
  ATAATTGCAG AAGGAAATCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389279	CHEV_4_141277961	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237528427					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141449357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	686 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr603862	regulatory region 603862	1931 bp distal
Rr603863	regulatory region 603863	641 bp distal
Rr603864	regulatory region 603864	within coordinates
Rr603865	regulatory region 603865	1363 bp proximal
Tssr1364	transcription start site region 1364	1393 bp downstream
Tssr44360	transcription start site region 44360	1251 bp downstream
Tssr44361	transcription start site region 44361	1355 bp downstream
Tssr44362	transcription start site region 44362	1412 bp downstream