rs237521918 SNP Detail

Summary

• ID
  rs237521918
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83474474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATTTAC CAAACACTTA
  AACTAACCTT AAATTGGGCT TGGCCCATAC TGTTAGGCTA GTTTGACATA GTAAAATAGT
  GATTTTTTTT TTTCCGGAAT CGTTAAGGCA GCCCCCTAAA ATTAGTACAG GACTTGAAGA
  GAAACTAAGG ATTTCACCCA CTAGGACTCC ACGTCTGACG ATCTCCAAAT GAAACTTTAT
  W
  TCTTTACGCA ACTTCATACT GAAGGTGCTG CATTGCAACC CTGCCCCTCC AGAGGACAAG
  ACAGTAGCTC ATAATTGATG CAGCCGCTCC GTGATTACTC AAGATGGTAC TGTCCAGTGC
  TAACTAGATC TAGAACTCTC TACGCCAGGG GTCTATACAA GTGAGGTGAG GAGGCATCAC
  TCGCGGTGCT AATGAAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354671229	MGP_WTSI_2_83484287	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237521918					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354671229	MGP_WTSI_2_83484287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83474474 () rs orientation: forward

Symbol	Name	Function Class
Rr397083	regulatory region 397083	146 bp upstream
Rr560160	regulatory region 560160	within coordinates
Rr560161	regulatory region 560161	93 bp proximal
Rr560162	regulatory region 560162	224 bp proximal
Rr560163	regulatory region 560163	276 bp proximal
Rr560164	regulatory region 560164	316 bp proximal
Rr560165	regulatory region 560165	551 bp proximal
Tssr18640	transcription start site region 18640	347 bp upstream
Tssr18641	transcription start site region 18641	371 bp upstream
Tssr18642	transcription start site region 18642	394 bp upstream
Tssr18643	transcription start site region 18643	434 bp upstream
Tssr18644	transcription start site region 18644	451 bp upstream
Zc3h15	zinc finger CCCH-type containing 15	448 bp upstream