rs237454431 SNP Detail

Summary

• ID
  rs237454431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGAACCT TTAAGCAGAA
  GAGGAAGGTG GACGAAAGGT AGAGCATCAG TCCACCATTT CTGGTCTTCC CAGCAAAAGG
  ACAGACAGAG AAGCGGGCAG GCTTTCAAGT GACCCCACCT ACCTGCCGTT GCGGTCTTCG
  CTGATTTGGA TGCAGAGGCG TTAGCTGCGT TCTTGGTCTC CTTGTCCTTC TCTTCTCCGC
  R
  TGTGGCTTTG ACCTCAGGAG TGGTGGTGGT CTTTGTAGCT TTTTCCACGG ATTCTTTCTT
  CTTGGGAGAA GCCACTCTGG ACACCTTGTC GGAGGATTCC TTCAAAGCTC CTGGTTTGGG
  GGAAGCTGCT AAAGGCTTGG ACTTCCCATC ACCCTTTTTG ACAGGTGAAG AGGACTTGGT
  CTTTGTGCCT GGCTTCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389674830	MGP_WTSI_13_100199245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237454431					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389674830	MGP_WTSI_13_100199245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565798 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr4149	transcription start site region 4149	302 bp upstream
Tssr123695	transcription start site region 123695	1952 bp upstream
Tssr123696	transcription start site region 123696	601 bp downstream
Tssr123697	transcription start site region 123697	791 bp downstream
Tssr123698	transcription start site region 123698	922 bp downstream
Tssr123699	transcription start site region 123699	1013 bp downstream
Tssr123700	transcription start site region 123700	1038 bp downstream
Tssr123701	transcription start site region 123701	1096 bp downstream
Tssr123702	transcription start site region 123702	1116 bp downstream
Tssr123703	transcription start site region 123703	1168 bp downstream
Tssr123704	transcription start site region 123704	1219 bp downstream
Tssr123705	transcription start site region 123705	1527 bp downstream
Tssr123706	transcription start site region 123706	1745 bp downstream
Tssr123707	transcription start site region 123707	1934 bp downstream