About   Help   FAQ
rs237396586 SNP Detail
Summary
  • ID
    rs237396586
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:117152259 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGAAAAAC AGGTGTGCCT
GCTGATCAGG TGCTGTGGGC TGCCCTGCAG TCCTGGTGAG CGACAGACAC TGAGGCAGGC
TTGTCTCATG AACAGGCTGC CTCTGCAGTG AAAGTTTTTG TGTATTTTTT TTAACCCAAG
CTAGTTTTCT AATGAATAAT ACTTGACTCA CTAATTTCCC CTCCTCCTCC TTCTCCTCAG
Y
TCTCCTAACA TCCTCATGTG ATCCCCAGAC TCAACTCCAG TAATATCAAG CTTTCCTATT
TTCCCATGTA AAAAAATCCC ATGACTCTGG GCCATGTTAA TATCAGGCTT TTGTGGGAAC
AGGTGGCCTC ACCCCATAAA TCATTAAATA CCATTCAGCT TGAATCATTT TAATGTGACA
GTCACAAACC AGTTGCTCTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369791604 MGP_WTSI_6_117125316 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237396586 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369791604 MGP_WTSI_6_117125316 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117152259 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
Rr637289 regulatory region 637289 974 bp distal
Rr637290 regulatory region 637290 1226 bp distal
Rr637291 regulatory region 637291 1175 bp distal
Rr637292 regulatory region 637292 1045 bp proximal
Tssr58395 transcription start site region 58395 1793 bp downstream
Tssr58396 transcription start site region 58396 1779 bp downstream
Tssr58397 transcription start site region 58397 1744 bp downstream
Tssr58398 transcription start site region 58398 1721 bp downstream
Tssr58399 transcription start site region 58399 1692 bp downstream
Tssr58400 transcription start site region 58400 1659 bp downstream
Tssr58401 transcription start site region 58401 1625 bp downstream
Tssr58402 transcription start site region 58402 1596 bp downstream
Tssr58403 transcription start site region 58403 1578 bp downstream
Tssr58404 transcription start site region 58404 1567 bp downstream
Tssr58405 transcription start site region 58405 1511 bp downstream
Tssr58406 transcription start site region 58406 1482 bp downstream
Tssr58407 transcription start site region 58407 1460 bp downstream
Tssr58408 transcription start site region 58408 1397 bp downstream
Tssr58409 transcription start site region 58409 1369 bp downstream
Tssr58410 transcription start site region 58410 1351 bp downstream
Tssr58411 transcription start site region 58411 1320 bp downstream
Tssr58412 transcription start site region 58412 1308 bp downstream
Tssr58413 transcription start site region 58413 1284 bp downstream
Tssr58414 transcription start site region 58414 1262 bp downstream
Tssr58415 transcription start site region 58415 1244 bp downstream
Tssr58416 transcription start site region 58416 1226 bp downstream
Tssr58417 transcription start site region 58417 1172 bp downstream
Tssr58418 transcription start site region 58418 1146 bp downstream
Tssr58419 transcription start site region 58419 1126 bp downstream
Tssr58420 transcription start site region 58420 1091 bp downstream
Tssr58421 transcription start site region 58421 1067 bp downstream
Tssr58422 transcription start site region 58422 1054 bp downstream
Tssr58423 transcription start site region 58423 1033 bp downstream
Tssr58424 transcription start site region 58424 974 bp downstream
Tssr58425 transcription start site region 58425 935 bp downstream
Tssr58426 transcription start site region 58426 917 bp downstream
Tssr58427 transcription start site region 58427 883 bp downstream
Tssr58428 transcription start site region 58428 872 bp downstream
Tssr58429 transcription start site region 58429 794 bp downstream
Tssr58430 transcription start site region 58430 763 bp downstream
Tssr58431 transcription start site region 58431 664 bp downstream
Tssr58432 transcription start site region 58432 583 bp downstream
Tssr58433 transcription start site region 58433 558 bp downstream
Tssr58434 transcription start site region 58434 111 bp downstream
Tssr62617 transcription start site region 62617 1722 bp upstream
Tssr62618 transcription start site region 62618 1699 bp upstream
Tssr62619 transcription start site region 62619 1663 bp upstream
Tssr62620 transcription start site region 62620 1630 bp upstream
Tssr62621 transcription start site region 62621 1546 bp upstream
Tssr62622 transcription start site region 62622 1006 bp upstream
Tssr62623 transcription start site region 62623 986 bp upstream
Tssr62624 transcription start site region 62624 840 bp upstream
Tssr62625 transcription start site region 62625 701 bp upstream
Tssr62626 transcription start site region 62626 636 bp upstream
Tssr62627 transcription start site region 62627 591 bp upstream
Tssr62628 transcription start site region 62628 459 bp upstream
Tssr62629 transcription start site region 62629 279 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory