rs237371856 SNP Detail

Summary

• ID
  rs237371856
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4746432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGTAGG GCAATGGGTG
  CTGTTTGCAG CATCTCTGGC CCCCAGCCAT GGTTGACCCT GACCTGCACA CCGCCGTTTG
  GCTCCCAGAA TTTCATGATC CTGCTTCCGT GTTCGGTAAA ACCTAAGGAA AAATCAGGTT
  CGCGCCACCA GGAAATATGC TTTAAAAAAA AAAAAAAAAA AAAAGCGCGC GGGGGGGGGG
  K
  GGCTTCGATC TTTTAAATGT CACATTTTGG TGGTCTTTTT CTCTCTCAAC CAGATCCCAG
  AAAATGAGAA AAGATGTACA TCTTTGTGTA AGAGAGAAAG CAGCTGGCCA GACATGTCCT
  TTGGTTCACA TCTAGGCCAG GGAGTCTCAA TTGTGGGATA AAACCCCCAT CCCCACCCCG
  AGGGGCAACG ACCCCCCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367234326	MGP_WTSI_6_4696432	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237371856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234326	MGP_WTSI_6_4696432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4746432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Peg10	paternally expressed 10			874 bp upstream
Rr626054	regulatory region 626054			within coordinates
Rr626055	regulatory region 626055			674 bp proximal
Rr626056	regulatory region 626056			763 bp proximal
Rr626057	regulatory region 626057			985 bp proximal
Sgce	sarcoglycan, epsilon			Intron
				Noncoding-Transcript-Variant
Tssr1771	transcription start site region 1771			866 bp upstream
Tssr1772	transcription start site region 1772			999 bp upstream
Tssr1773	transcription start site region 1773			1010 bp upstream
Tssr54763	transcription start site region 54763			928 bp upstream
Tssr54764	transcription start site region 54764			1178 bp upstream
Tssr59724	transcription start site region 59724			37 bp upstream
Tssr59725	transcription start site region 59725			586 bp downstream
Tssr59726	transcription start site region 59726			613 bp downstream
Tssr59727	transcription start site region 59727			634 bp downstream
Tssr59728	transcription start site region 59728			738 bp downstream