rs237368432 SNP Detail

Summary

• ID
  rs237368432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72593445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTGCC AAAGTCGTCT
  TGTCCTGGTC TTTTTTATCT GACTTCTGCC CCTGACCGTC GGTCGGCCTT GTAGTCTTTA
  CCTGGTTAGA AGAAGGCAGG GGAGTGGAGG ACTGTTTGGA AGGCTGATTC GGAGGATTCT
  GAGAGTCACC TGAGTCGGCG TCTCTCTTAT AAACGGACGG CAGAGCTCCT GAAACAAACA
  R
  AAAAAACAAA AAACAAAAAA CAGTAAGTCC TCGGAAGAAG AGAAGCGGGC TTGACTTCTG
  AGAGCCTAGC GGGGATGGCC GAATGGGAAA GCGGAGATGG CTAGAGCAGG GTCGGGCCAG
  ACAAGAAAGA CGCCGGCTCC CGTAGCGACC CACCAAGGTG AGGAATGGGG AACCTAAAGG
  GGAGAGTGAG CTGGGCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss368753301	MGP_WTSI_6_72566456	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	A	G	A	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs237368432					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	A	G	A	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368753301	MGP_WTSI_6_72566456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72593445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	within coordinates
Gm20536	predicted gene 20536	272 bp downstream
Gm67593	predicted gene, 67593	311 bp upstream
Rr399708	regulatory region 399708	180 bp upstream
Rr632243	regulatory region 632243	966 bp distal
Rr632244	regulatory region 632244	within coordinates
Rr632245	regulatory region 632245	274 bp proximal
Rr632246	regulatory region 632246	366 bp proximal
Rr632247	regulatory region 632247	528 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	393 bp upstream
Tssr61478	transcription start site region 61478	263 bp downstream