rs237347058 SNP Detail

Summary

• ID
  rs237347058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133963701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTTTGT
  GTAACCAACT GTTGGTGTTA GACGACAACC TCTGTGATTC AGTTCTGTCC TTCCATCATG
  TGTTATAGAG ATTGCACTCA GGGCAACAGA CACACAGCAA GTATTTTTAC CAGCTCATCC
  ACCTCAGCAG CCTTAGCATT GGTTCTTCTT CTTCTTCTTC CTCCTCCTCC TCCTCCTCTT
  Y
  TTCCTCCTCT TCCTTTTCCT CCTCTCCTTC TTCCTCATCT TCTTCTTGTT CTCCCTCCTC
  CTCTCTCTCT CTCCTTTTCT CCTTTTAAAG ATCTGTTTAC TTTTTACCTC TGTGTGTGTC
  TGGGGGTAAA GAGTATGTCA ACTTGAGTGC AGGTGCCCTG GAAAGCCAGA GGCACTGGAT
  GCCCCTGGAG CTGGAGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370141078	MGP_WTSI_6_133936756	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237347058					SNP	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370141078	MGP_WTSI_6_133936756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133963701 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	150 bp distal
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1382 bp distal