rs237321562 SNP Detail

Summary

• ID
  rs237321562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTCGCA TCAGTTTCTG
  CCTCCAGATG CTTGCCCTCT TTGAGTCTTG TCCAGACTTC TTTCAAAGGA CAAGCAGTGA
  TTTAGAAGTG TAAGCCAAAT AAACATTTCC TCCCCAAGTC CCTGCTAGGA GCCATCTAGG
  AGATGCCAAA AAGTAGCAGG TGATTTTCCT CAGATGGTTC ATCCTTGGAT TAAAATCTAC
  R
  GCAGACTTAC TCCAGCAGGC AAGTTCCAGC AGGATTTCAT TTTAGGAAAG ATTCCTTCTA
  TTAATATGCT TTTCTTCTTA TTATTAACTA TATATAACAA TCACTAATCA TTAGCTCCTT
  TGAGCAGATC TCTGTGGATC AATGAAGATG TACAGTCTTG TAGTGATGCT ATATAGACAA
  ATAGGCGAAT TCTTAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
ss379693977	MGP_WTSI_10_21876986	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
rs237321562					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379693977	MGP_WTSI_10_21876986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1219 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1429 bp upstream
Raet1e	retinoic acid early transcript 1E	1362 bp upstream
Rr428833	regulatory region 428833	899 bp proximal
Rr428834	regulatory region 428834	1417 bp proximal
Tssr92677	transcription start site region 92677	1215 bp upstream
Tssr92678	transcription start site region 92678	1289 bp upstream
Tssr92679	transcription start site region 92679	1341 bp upstream
Tssr92680	transcription start site region 92680	1386 bp upstream