rs237299489 SNP Detail

Summary

• ID
  rs237299489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGCGCCCTCC CTCTAAAATG CAATAATAAA AGGATTATCA TAGGCACTGA ATCCTCAGCA
  CTTGTGGAAT AAGGGTGGGT GAGTCACATG ACCTCACGTA GCGGGCTGGG TGTCACTGTT
  CTTTCTTGAC CTTCAGCCCC ATACCTCATC CTTATTGAGA TTTCACAGGT CAGTCCCACC
  R
  ACAGTTTTGG GAAGACACTA TTGGCTGACA GCCTGCGTTA TGAAAGCATC AGCTCTCCCT
  GGGCCTGCTG GGTGAGGAGC AGGTAAAAGC CTGGTACCTC CATTTTTACT TTATGGGCCT
  CAAGCCCTAT GACCCGAGTT TGGTCTTTCC AGCTCTGGTG GAAGAACTGA TTGCAAGTAA
  GTGTCCTCCG ACCTCCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317071	CHEV_4_129780201	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237299489					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996750 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1249 bp distal
Rr600439	regulatory region 600439	389 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	863 bp proximal
Rr600442	regulatory region 600442	1545 bp proximal
Tssr39229	transcription start site region 39229	1929 bp upstream