rs237299372 SNP Detail

Summary

• ID
  rs237299372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163382078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCGGAC AACTTATTTC
  CTATCAACTG TGTGAGCTTG GGTGAAGAAC TCAACCTCTC TGGGCCAGCT GTCTTAACAA
  ACCGCTCATG AAAACGCCCA GCATCAGAGC AGCGTGAGAA TTCAGGAGCG AAGCTCCTGA
  CACAGATGTC CACGCCATTC ATGTCTCTGA CGCCATTCGT CCTTGTGGGA CAATTAGAAC
  R
  TAGGCATTTT CTCAACTTAC AGGGAAGAAA CTGAAGCTGA AGGGTCCAGA CAGTCTGGGA
  AGGGCTCTGG CTTCTGTGTG TCTCTAAGGG CTGGATGCTT CCAGAGGTAG GACATAGCCA
  AGATTAGGAG GTGCCCCTGC CTCACATTCC TGCTGCTGGG ACTACTCAGA GACCTACAGG
  ACACAGATGC CATCCCCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603599	CHEV_2_163365894	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237299372					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163382078 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	210 bp distal
Rr569405	regulatory region 569405	70 bp proximal
Rr569406	regulatory region 569406	634 bp proximal
Rr569407	regulatory region 569407	1502 bp proximal
Tssr27298	transcription start site region 27298	1557 bp downstream