rs237239389 SNP Detail

Summary

• ID
  rs237239389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTTCTT TTTCTTTTTT
  TTCCTTTTTT TTTTTGAGTA CACTCTCGCT GTCTTCAGGC ACACCAGAAG AGGGCATCAG
  ATCTCATTAC AGATGGTTGT GAGCCATCAT ATGGTTGCTG GGAATTGAAC TCAGGACCTC
  TGGACGGTGC TCTTAACCAC TGAGCCATCT CTCCAGCCCC TCCCCTTTTC TTTAAAGAGC
  R
  TGTTTGCTGA CATTAAAATT GAACTTTGAG CAGAGAGCTT TGTCTTGGTT CCTTCCTTAT
  CTCATGCAGC CTAGCCCTCC TTCTCTTCCA GGTTTCCAAC ATGCCTTTCC AGCCTAGGAC
  CCAAAACATG TGGTCGGCTG GCCGGACACA ACAGGTACAC ACATATAAGT AAAAACAAAA
  TAAATATTTT AAAAGTAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369757887	MGP_WTSI_6_115647430	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237239389					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369757887	MGP_WTSI_6_115647430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674373 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	360 bp upstream
Rr637025	regulatory region 637025	1688 bp distal
Rr637026	regulatory region 637026	490 bp distal
Rr637027	regulatory region 637027	201 bp proximal
Rr637028	regulatory region 637028	1375 bp proximal
Rr637029	regulatory region 637029	1471 bp proximal
Rr637030	regulatory region 637030	1705 bp proximal