rs237178619 SNP Detail

Summary

• ID
  rs237178619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152423200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACTTGT TCTCGGCTGT
  TAACTAGTCG CGCTGGCGTA ACGATGGGAT GGGGTTGCCA CAGCAACCAG ACTGGACGTC
  ACAATCCGGG CATGTGTGCC GCCCCCCCGC CGTGCCGCCG TGCCGCGGGC GCTGCCGCCG
  CCACCCTCGG CCGGCTGCGG GACTCGCGCT GCGGGGCGCG GTGGGCGGAG CGGCCCGGGC
  Y
  TGGCGGGTGC GGGCAGAGGC GGCCTAGAGC TTGCGGGGTC GAAACGGGGG GGTGGAGGTT
  TGGGGGGCTG GGGGGGCCGG CGGCCGCCAT CTTCTTGCCG AGACCGCCTC GCCCGCCGCG
  CGGGTCCGTC CGGCAGCGCA CGGGTTAAGG CTGGCACCGC GCCCGGCGGG AGGGGGGCGC
  CCACCTTCCT TCCCCCCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363710642	MGP_WTSI_4_151712852	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237178619					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363710642	MGP_WTSI_4_151712852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152423200 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	mRNA-UTR
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	within coordinates
Rr605853	regulatory region 605853	155 bp proximal
Tssr40549	transcription start site region 40549	34 bp downstream
Tssr40550	transcription start site region 40550	within coordinates
Tssr40551	transcription start site region 40551	72 bp upstream
Tssr40552	transcription start site region 40552	171 bp upstream
Tssr40553	transcription start site region 40553	231 bp upstream