rs237174805 SNP Detail

Summary

• ID
  rs237174805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGCTGTG TCTGGAGTCT GCAGTCTGTG
  CCCTGAGTCC CAGCACGGCT CTGTAGCGTG GCACACACCG CCCTGCTCTC CTCCTTTTTG
  TGAGAGCAAA GGAGCAGAAG GCCATGCTTA GGAGCAGGGT GCCATGGGGT TCTCGTGACA
  Y
  AGGTGAGGGA CCATTTGAGC CCACATATGT TCCTAGGCAG ATGTGCCCGT TTGTGGGGCA
  GCACACAGCC CTACACAGCT GAACGGCTTC ACAAACAATA CTGGTCCTCT TCAAGAAAAG
  TAGGAGGTCC AGCTGCTCAC GTCAAGtgtc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433793	CHEV_4_151352457	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237174805					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11			Intron
				mRNA-UTR
				Splice-Site
Rr605686	regulatory region 605686			413 bp distal
Rr605687	regulatory region 605687			311 bp proximal
Rr605688	regulatory region 605688			498 bp proximal