rs237174575 SNP Detail

Summary

• ID
  rs237174575
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTGCTGA CCAAAACCCC ATAGAGGAAA
  CCAGTACTTA CCTGGCCGCA CCCCTCCTCA TAGCTCAGAA CCAGGGCGTC CCACCTTTCC
  TAGTGCACCT CAGGAGTTTC TCCAGAGGCC CAGCTCCCGA CTCTCACGTC CCTACAATTC
  S
  AGACCCCATA ATCCCGTACC TTCTTTTTCT CTCAACTCCT ATCTTCAGTT TCGTTCCTTC
  CCTCTCTTCT TGCTCCAGAA CACCTTATAA CACAGTTAAA CAGTTCACTG ACATAAACCT
  GATCACATGC CTTTGTCTGT AAACCCTATT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812338	CHEV_6_67486109	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237174575					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513099 () rs orientation: forward

Symbol	Name	Function Class
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1303 bp distal
Rr631669	regulatory region 631669	860 bp distal
Rr631670	regulatory region 631670	309 bp distal
Rr631671	regulatory region 631671	39 bp distal
Rr631672	regulatory region 631672	136 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	319 bp upstream
Tssr1872	transcription start site region 1872	1334 bp upstream
Tssr61255	transcription start site region 61255	1370 bp upstream
Tssr61256	transcription start site region 61256	889 bp upstream
Tssr61257	transcription start site region 61257	418 bp upstream
Tssr61258	transcription start site region 61258	313 bp upstream
Tssr61259	transcription start site region 61259	245 bp upstream