rs237140917 SNP Detail

Summary

• ID
  rs237140917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAAAGT ATTTTAAAGT
  ACATGAAAGA AATAAAATTT AAAATGTACA CAGAACCTGG CATAATGGCA CAAATCTTTA
  ATCCCTGCAC TTGGAAGGAG AAGGCAGGCA GATCTCTGTG AGTTCGAGGC CAGCCTCGTC
  TACATAGAAG CTCCAGGTGA GCCAGGGATA CATAGAGAGA CTGTCTTTTT TTTTTTTTTT
  W
  AAGTACAGGT ACACACACAC ACACACACAC ACACACACAC ACACACAATT CACAATTTCT
  TTCTGTCAAG TTCAGGACTA TAATCAGACA AGTTAACTTT GTCATGTTAT TAAAGCTGTG
  TCTCTTGGAT ATTGTAATCA TCTAAAAATT ACAGCACAAA GACCCTCCCA TGAACACTAC
  CATTCTGAGC CTGTGAAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379183310	MGP_WTSI_9_121149832	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237140917					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379183310	MGP_WTSI_9_121149832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069780 () rs orientation: forward

Symbol	Name	Function Class
Gm56090	predicted gene, 56090	1628 bp upstream
Rr688904	regulatory region 688904	133 bp distal
Rr688905	regulatory region 688905	225 bp distal
Rr688906	regulatory region 688906	1177 bp proximal
Ulk4	unc-51-like kinase 4	Intron