rs237127628 SNP Detail

Summary

• ID
  rs237127628
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:42950430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGCTG GGGTGACATC
  ACCGACCCCC CTCCCCCGCG CGAACCCCCT TCCTTCCTCT CCCTGCCGCG CCTTTTGTCC
  GGGCCAGGCT CGGCTCTGCC CCGCCCCTCC CCGCCCATCT GCGGGGGAGG AGACTCCCCG
  TCAGTGACTT CATTGAGTAG GTTCTTGGGG ATTGGGCTTG GGTCCTCCCC AGAGAGGCGA
  S
  AGGAGCTCAC TGACTCTCAG GCCCTCACTA TCACACCTGT CACAGGTACA CACGCTGCCA
  CTCAACAACT ACACACTGTC ACTGCCAGCC TCACTGTCAC ACAGCCGAAC AGGCGCTCAC
  ATCATTCAGC CAGACACTGC TGCACCTGAG AGCAGGTGGC CACTGGATCC TCTCTCTGCA
  CTCTACACCT GGGGACCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361308114	MGP_WTSI_4_42963302	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237127628					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308114	MGP_WTSI_4_42963302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42950430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14174	CpG island 14174			within coordinates
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm69502	predicted gene, 69502			813 bp downstream
Rr398224	regulatory region 398224			510 bp downstream
Rr590883	regulatory region 590883			1651 bp distal
Rr590884	regulatory region 590884			553 bp distal
Rr590885	regulatory region 590885			24 bp distal
Rr590886	regulatory region 590886			within coordinates
Tssr36908	transcription start site region 36908			507 bp downstream
Tssr36909	transcription start site region 36909			within coordinates
Tssr36910	transcription start site region 36910			21 bp upstream
Tssr36911	transcription start site region 36911			51 bp upstream
Tssr41383	transcription start site region 41383			903 bp upstream