rs237122833 SNP Detail

Summary

• ID
  rs237122833
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62539262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTCT TATACATAGG
  AATGGGGATC AGGAGTAGGG ATGAAGGTAA AATATATCCA GATTTGTGTA GTGTCCAAGA
  TGGAGGGACC ACACGAATTG CCCTGACTGT AAAAAATACA GAGAAGACCC TCTTTAGAAT
  CTGGAGCTTA ACTCTATAGT GTATAGGTCA CAGGCAGAGG CCCATTTCCC CCCCACCCCC
  M
  CCCCCCCCCC GGCACCTGCC TCCATCACTG GGGACCCAGA TGTTCTTTCT AACATTTTCC
  TGCACCGTTG ACCTCAATCT ATGCTCCCTA CTTTCCTGAA GTTAGTCCCT GTGGCAAGAA
  CATTTAGATG TTTATAAACA TAAGACAGGG TGAGCGCCGG ATAGGAGGTA ATGAAATCCC
  AGGTGTTCTT GGGACCAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J
ss361716746	MGP_WTSI_4_62282059	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	C	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J
rs237122833					SNP	A	C	A	C	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361716746	MGP_WTSI_4_62282059	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62539262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			1433 bp distal
Rr593363	regulatory region 593363			827 bp proximal
Tssr37501	transcription start site region 37501			1495 bp downstream
Tssr37502	transcription start site region 37502			1356 bp downstream
Tssr37503	transcription start site region 37503			1306 bp downstream
Tssr37504	transcription start site region 37504			1285 bp downstream