rs237080694 SNP Detail

Summary

• ID
  rs237080694
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121068156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAACA GTAGGAGCAG
  CAGGGAGACA GAGGAGAAGC AGCAGCTGGG AGACAGAGGA GAAGGAGCAG CAGGGAGACA
  GAGGAGAAGC AGGGAGACAG GAGAAGAAGC CGCAGGGAAA CAGTAGGAGC AGCAGGGAGA
  CAGAGGAGAA GCAGCAGCTG GGAGACAGAG GAGAAGGAGC AGCAGGGAGA CAGCAGCTGG
  A
  AGACAGAGGA GAAGGAGCAG CAGGGAGACA GGAGAAGAAG CAGCAGGGAA ACAGTAGGAG
  CAGCAGGGAG ACAGAGGAGA AGCAGCAGCT GGGAGACAGA GGAGAAGGAA CAGCAGGGAG
  ACAGAGGAGA AGCAGGGAGA CAGGAGAAGA AGCAGCAGGG AAACAGTAGG AGCAGCAGGG
  AGACAGAGGA GAAGCAGCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	I/LnJ	KK/HlJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
ss379183270	MGP_WTSI_9_121148208	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	I/LnJ	KK/HlJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
rs237080694					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379183270	MGP_WTSI_9_121148208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121068156 () rs orientation: forward

Symbol	Name	Function Class
Rr688903	regulatory region 688903	636 bp distal
Rr688904	regulatory region 688904	1254 bp proximal
Rr688905	regulatory region 688905	1378 bp proximal
Ulk4	unc-51-like kinase 4	Intron