rs237077943 SNP Detail

Summary

• ID
  rs237077943
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103627302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTCGAT TACGCCGAGA
  ATCTGCTTCA TGGCCTCGGT CTGGACGGCG CCGGTGCCGG TTGCCGGATG CTGAGAAGCC
  GGCGCAGCTG CCCCGGCCGC CGCCTCACTC CCGGAGGAAC CGGACGGCGG CGGCGGTCCC
  GACGATTTGC TGCCGCTTCC GCTGTGGCTG GTGGCCGAGG GCATCTTTAG ACCGAGAAGA
  S
  AGGAGAGGAA AAAAGCGGGA GGGAAGGACA AGACCAGCAA GTCAGGAGAC GGACGGGGAG
  AGACGCGGGA CAAAACGCGC AGCGGGCGGG CGGGCAGGCG GCTACGCGCG CGCGCGGTGG
  GGGGAGGGGG CGGCGCGCGC CGCCGGCAGG AAGGGGCCCA CGGGCACGCG CGCGACCCGC
  CAGCGGGGCG CCGGGCCGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355099990	MGP_WTSI_2_103637114	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237077943					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355099990	MGP_WTSI_2_103637114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103627302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Caprin1	cell cycle associated protein 1			Intron
				mRNA-UTR
Cpgi11985	CpG island 11985			within coordinates
Gm75184	predicted gene, 75184			220 bp upstream
Gm75190	predicted gene, 75190			788 bp downstream
Rr373619	regulatory region 373619			within coordinates
Rr561931	regulatory region 561931			998 bp distal
Rr561932	regulatory region 561932			137 bp proximal
Rr561933	regulatory region 561933			404 bp proximal
Rr561934	regulatory region 561934			682 bp proximal
Tssr586	transcription start site region 586			612 bp downstream
Tssr19172	transcription start site region 19172			995 bp downstream
Tssr19173	transcription start site region 19173			942 bp downstream
Tssr25500	transcription start site region 25500			within coordinates
Tssr25501	transcription start site region 25501			32 bp downstream
Tssr25502	transcription start site region 25502			635 bp downstream
Tssr25503	transcription start site region 25503			660 bp downstream