rs237049260 SNP Detail

Summary

• ID
  rs237049260
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TGGTTACTTT TTGTTGATGG
  G
  TTTTCACCCG GAGGACCGCC CCCCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320773093	CHEV_3_54720528	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237049260					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	439 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1586 bp distal
Rr576864	regulatory region 576864	1085 bp distal
Rr576865	regulatory region 576865	765 bp distal
Rr576866	regulatory region 576866	589 bp distal
Rr576867	regulatory region 576867	703 bp distal
Rr576868	regulatory region 576868	177 bp distal
Sertm1	serine rich and transmembrane domain containing 1	719 bp upstream
Tssr33288	transcription start site region 33288	779 bp upstream
Tssr33289	transcription start site region 33289	722 bp upstream
Tssr33290	transcription start site region 33290	585 bp upstream