rs236998132 SNP Detail

Summary

• ID
  rs236998132
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80054548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAATCTGG ATGGTCACAT
  AGATTGCATT TGCAATAACT CTGCTGACAA TTATCTGAAA GTCTTTCTCG TCAGAGGGAG
  ATTCTGTTAT CTTTCTGCAA CAAGTCCCAT AGGCAGGTAC TGTACTCTTT ATCATTCTTA
  CCATTGACCT GAAGCCTAAG GGTCCAGGAA GCTCAGCTGC CTCTAACACT CAGTTCCTGA
  S
  GTGAGTCTTC TAAGGTGACA CTTACCAATT TTACAGAGTC CTAAGATGGG AGAAGAGGGG
  GCCATCTGGA CAGGGGGCTG GGGGGAGGAA GGGCCAGCCA GAGCTCTCTT TATCCTTAGA
  TTTGGAGCTG ATCCATAAGT AACCACAGAG AGCTTTAGTG CTAAAATCCA GTCAGTCCCT
  TTATACCCTT GAGGAACTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372044883	MGP_WTSI_7_87549686	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236998132					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372044883	MGP_WTSI_7_87549686	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80054548 () rs orientation: forward

Symbol	Name	Function Class
Furin	furin, paired basic amino acid cleaving enzyme	Intron
Gm44851	predicted gene 44851	within coordinates
Rr649899	regulatory region 649899	1548 bp distal
Rr649900	regulatory region 649900	521 bp distal
Rr649901	regulatory region 649901	92 bp distal
Tssr67443	transcription start site region 67443	355 bp downstream
Tssr67444	transcription start site region 67444	731 bp upstream
Tssr67445	transcription start site region 67445	1762 bp upstream
Tssr73252	transcription start site region 73252	1977 bp upstream
Tssr73253	transcription start site region 73253	1491 bp upstream
Tssr73254	transcription start site region 73254	1461 bp upstream
Tssr73255	transcription start site region 73255	1422 bp upstream
Tssr73256	transcription start site region 73256	759 bp upstream
Tssr73257	transcription start site region 73257	736 bp upstream
Tssr73258	transcription start site region 73258	625 bp downstream
Tssr73259	transcription start site region 73259	1510 bp downstream
Tssr73260	transcription start site region 73260	1539 bp downstream