rs236966991 SNP Detail

Summary

• ID
  rs236966991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57378898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAATCCC ACCGTTAAAG CGGCTATTTC AGTGCAGAGG
  TGCAGCTCAC TCTTTCTTTC TCAAAGCCAC GGAGACTGCA GAGGCAGACT GCCTGGGAAG
  R
  GGGGGGGTGG GGGGGGATCT GGTGTCAATC TCTTTTGTTG AAAGCCTGTA CCAATCGATT
  CTAGAAATTC ACTGCCACAT TTCCTGGAGT GTCTCTTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	WSB/EiJ
ss358077015	MGP_WTSI_3_57275399	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	WSB/EiJ
rs236966991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358077015	MGP_WTSI_3_57275399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57378898 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	within coordinates
Rr375020	regulatory region 375020	within coordinates
Rr577104	regulatory region 577104	within coordinates
Rr577105	regulatory region 577105	1247 bp distal
Rr577106	regulatory region 577106	1076 bp distal
Rr577107	regulatory region 577107	846 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron