rs236964441 SNP Detail

Summary

• ID
  rs236964441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105708049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTGAG CGGTAGCTCT
  TTTTCCAAGG CATGAAAGGT CCCCTCAACT CTAGTTTTCT ATCCTGTGAG GAAATCTCAG
  ATAGGAGGGG GGGCGGACGC GGGGGACACA ACTGTCCTTC CTTGCTCTTC TCCTTACAAC
  AGCCAATTAC ACAACTCAGC AGAAGACACT GCCCTTAACT TTCTGAGTAA GGAGACAAGC
  Y
  ACAATCCCAC CACCCCACAC TCCTCACACG CCCTCGGTGG GCGGAAGACC GGAATCACAC
  CGTGGCCTCT TTCCTGACAA AATTCAGGGG TAGCAGCAGA TATCAGAGAG TCGAGAGCGA
  CGCTGCAAAG GCGAACACAT GGCAAGCGGC AGAATACAGA GGGCAGGGAG GGCGGGAACC
  CGGGCTGGCG GCGGAGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863209	CHEV_3_105603651	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236964441					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105708049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13662	CpG island 13662			within coordinates
Rap1a	RAS-related protein 1a			Intron
				Noncoding-Transcript-Variant
Rr582779	regulatory region 582779			1556 bp distal
Rr582780	regulatory region 582780			1075 bp distal
Rr582781	regulatory region 582781			within coordinates
Rr582782	regulatory region 582782			116 bp proximal
Rr582783	regulatory region 582783			542 bp proximal
Tssr34930	transcription start site region 34930			46 bp upstream
Tssr34931	transcription start site region 34931			566 bp downstream
Tssr34932	transcription start site region 34932			590 bp downstream