rs236888079 SNP Detail

Summary

• ID
  rs236888079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77645564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGATCCTC CCCTGTTTGG GAGAGTTCAC
  CTTTCCAAAA GCATTTACTA CAAATGCGCC CACGAGAGGT CAAGGAGACG GACAAGAACA
  GCTTATTTGA TTTGTGGTTT CACCTTAAAC CTCCTCAAAT CACTTTCAGA AACAAGTAAA
  R
  GTGTAAACGA TAAATCCGCA AAAACTTGAT TACTGAAAAA TACAGAATCC GAGCAAGCAA
  GGCTTTGAGC ACATAAACAT ATTTTCACCT TCCATATCTT AAGTAGCCAA ACCTACAAGC
  CGGTATTTTA CATTCTAAGG ACATTCAACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358141	CHEV_2_77653277	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236888079					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77645564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	649 bp proximal
Rr559844	regulatory region 559844	607 bp proximal
Rr559845	regulatory region 559845	1586 bp proximal
Rr559846	regulatory region 559846	1768 bp proximal
Rr559847	regulatory region 559847	1837 bp proximal
Tssr24865	transcription start site region 24865	1373 bp downstream
Tssr24866	transcription start site region 24866	1460 bp downstream
Tssr24867	transcription start site region 24867	1490 bp downstream
Tssr24868	transcription start site region 24868	1516 bp downstream
Tssr24869	transcription start site region 24869	1538 bp downstream
Tssr24870	transcription start site region 24870	1659 bp downstream
Zfp385b	zinc finger protein 385B	Intron