rs236881910 SNP Detail

Summary

• ID
  rs236881910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCGAGGC CCTGAGCGCC
  GGCAACCGCG ACAAGGCCCA GCGCTTCCTC CAGAAGGCCG AGAAGCTGTA CCCGCTGCCG
  GCCGCGCGCG GTGAGCCCCG GCCCCCGCCG TGACCCCGGC CCCCGCGCCC TGCGCCCCGC
  CGGCCGCGGC CGCTCCAGCA CTCAGGGACA CAGGCGGGGC GCTGTGGGGT GCTGGGTGAC
  S
  GGTCCCCTCC CCAGATCAGC CTAGGCCCCT GTGAAGTGAC AGGAGCGGGG ACTCCAGCGG
  CTTCTCGGGC TTCACCATCC CCGGGTTCTG TAATTTGTCC GTTCCTTAAG CAAGTATCTT
  CGAATACCTT AGATGACACT GCTTTTCCCA GGGAGGAGAG AGCCCTTACA AGACAGCTCC
  ACTTTCGAAA GGGATGGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359894961	MGP_WTSI_3_137531131	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236881910					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894961	MGP_WTSI_3_137531131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13867	CpG island 13867			within coordinates
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14			Intron
				mRNA-UTR
H2az1	H2A.Z variant histone 1			1245 bp downstream
Rr586005	regulatory region 586005			1797 bp distal
Rr586006	regulatory region 586006			482 bp distal
Rr586007	regulatory region 586007			391 bp distal
Rr586008	regulatory region 586008			1293 bp proximal
Tssr31918	transcription start site region 31918			370 bp downstream
Tssr31919	transcription start site region 31919			333 bp downstream
Tssr31920	transcription start site region 31920			291 bp downstream
Tssr31921	transcription start site region 31921			254 bp downstream
Tssr31922	transcription start site region 31922			203 bp downstream
Tssr31923	transcription start site region 31923			98 bp downstream
Tssr31924	transcription start site region 31924			50 bp downstream
Tssr31925	transcription start site region 31925			38 bp downstream