rs236878979 SNP Detail

Summary

• ID
  rs236878979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153566452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATTT CTAAATATAA
  TCTGATGTGT CCATATAATG TTACTTGCAT GTGTGTTTTC AGGGCTGATT GGCTTTGGAC
  GACCAATTTG TGTGCTCTTC TCTGGGGACA GTCACCTCTC CCGCTCCCAG CTCTCCTTAG
  TTGTCTATAG CTCTTTGTGT AGGGTTGAGA CCTCATGAGC TTTTCTTCAT CCAGATTAGC
  R
  TATTCACTGG TGTTGTCCTT GTCACCTCAC ATCTGGACAT TCAGACCCAG TGTCTACTTC
  TCAGTTTTAG ACATAAAGCA AGTGGCTCTG CACAGGCCTC CTTATCTCTT CCTTTGCGAT
  TCCAAGAACA GCCTGCTAAC TAAGAGAAAA ATTGTGCCTG TAGTAGCCAT CCCAGATATG
  CAAATGAGTT GAGCTGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320564624	CHEV_2_153550268	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236878979					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153566452 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	1560 bp downstream
Rr567732	regulatory region 567732	1074 bp distal
Rr567733	regulatory region 567733	within coordinates