rs236876589 SNP Detail

Summary

• ID
  rs236876589
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180087354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATCAAC AGAGTGAAGG
  AACAACCTGC TGGGACCAGG AGAAACTATC TGGGAGCTAT GCTGACAAGC TGCTATCTGG
  CATAGCAAGG AGGTCGAGCA AGGCCCCAGC AGTGAAATAA ACAACCCCAG TGAGAATGGG
  GAAGGACCTC TGTGGACAGT TCCCAGAAGA AAACACAGCC GAGCAAGGGG GGGGGGGGGG
  S
  GGGGGGATGA TAAAAGACTC ACCAAGGAAA TGCAAACCCA AACTGGCAAC TTGCCCACAC
  CTGCTAGAGC AGTAACAATG AAAAGACACA GAAAACAAGT GTTGGCAAGG ACGGGGACAA
  AAGAGAACTC TTGTGTACTC ATGGCTGGAT GCAAATTCCT ACAGCCATTA TGGAAATTTT
  TATGGAAGTT CCTCAGAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cJ	C57BL/6J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss356760854	MGP_WTSI_2_180180266	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cJ	C57BL/6J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs236876589					SNP	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356760854	MGP_WTSI_2_180180266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180087354 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	1548 bp downstream
Rr572757	regulatory region 572757	within coordinates
Tssr22239	transcription start site region 22239	1508 bp downstream
Tssr28110	transcription start site region 28110	1727 bp upstream
Tssr28111	transcription start site region 28111	1628 bp upstream