rs236853895 SNP Detail

Summary

• ID
  rs236853895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGGAAAT AATTTTCTTA AAAAGTGTGA AACAGAATCT
  AGGAAGATTC ATTATATATG GGAAGTTTGA AAGTGTTAAT AAATTTAGAT CTATGAGAAA
  R
  GGATTGACTA CTATTCAAAA ACATTATCCT TATTAAGCTG GGGCTATAAC TGCAGATAAG
  ACAGTTAAAA GAAAAAAAAA GTATTCTTAT AAATAAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584289	CHEV_2_156943731	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236853895					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959915 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	711 bp distal
Rr568437	regulatory region 568437	847 bp distal
Rr568438	regulatory region 568438	446 bp distal
Rr568439	regulatory region 568439	1036 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1597 bp downstream