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rs236850353 SNP Detail
Summary
  • ID
    rs236850353
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:110251744 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCCTGCTG CATTCAGGAT
CTGCCCCTCC TTCCTGCCCT TCCCAGGAAC ACCCCCTCTA GAGTAGCTCT AGCTCCTAAA
ACATCCATAC CTTTGTCCAT TTGCTTCCTT CTGCTGGGCC TTCCTGCCTT ACCCTCTATC
TGAAACCCTT ATTGATTCTT CAAGGCCCAA GTTCAAAAGT CCCCTCCAGC GGGAAGCCTC
Y
TCATTCTCCC AGAGCCAAAG TCCTGCCCAC ATCAGTTCAC TCATAATCTT CAAACCACAT
TGGTATTACC TGCTGTGTCC CCAGCCAGAC AACCCTGTAT CTATTCACAG CTGGGCCTCC
CGGGCCAGTT GCAGGTAGAA TGAATATTTC AATGATGTGT CCCTGGAATC CTGGGAGGAC
AGAACCCTGT AGACTCCTGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378902795 MGP_WTSI_9_110325180 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236850353 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss378902795 MGP_WTSI_9_110325180 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:110251744 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ngp neutrophilic granule protein mRNA-UTR
Tssr3020 transcription start site region 3020 1787 bp downstream
Tssr3021 transcription start site region 3021 1380 bp upstream
Tssr3022 transcription start site region 3022 933 bp upstream
Tssr3023 transcription start site region 3023 294 bp upstream
Tssr3024 transcription start site region 3024 276 bp upstream
Tssr3025 transcription start site region 3025 187 bp upstream
Tssr3026 transcription start site region 3026 138 bp upstream
Tssr3027 transcription start site region 3027 41 bp upstream
Tssr3028 transcription start site region 3028 11 bp downstream
Tssr3029 transcription start site region 3029 26 bp downstream
Tssr3030 transcription start site region 3030 47 bp downstream
Tssr3031 transcription start site region 3031 220 bp downstream
Tssr87363 transcription start site region 87363 1843 bp downstream
Tssr87364 transcription start site region 87364 1792 bp downstream
Tssr87365 transcription start site region 87365 1758 bp downstream
Tssr87366 transcription start site region 87366 969 bp downstream
Tssr87367 transcription start site region 87367 931 bp downstream
Tssr87368 transcription start site region 87368 398 bp downstream
Tssr87369 transcription start site region 87369 380 bp downstream
Tssr87370 transcription start site region 87370 330 bp downstream
Tssr87371 transcription start site region 87371 302 bp downstream
Tssr87372 transcription start site region 87372 232 bp downstream
Tssr87373 transcription start site region 87373 192 bp downstream
Tssr87374 transcription start site region 87374 170 bp downstream
Tssr87375 transcription start site region 87375 147 bp downstream
Tssr87376 transcription start site region 87376 141 bp downstream
Tssr87377 transcription start site region 87377 127 bp downstream
Tssr87378 transcription start site region 87378 76 bp downstream
Tssr87379 transcription start site region 87379 31 bp downstream
Tssr87380 transcription start site region 87380 175 bp upstream
Tssr91616 transcription start site region 91616 1802 bp upstream
Tssr91617 transcription start site region 91617 1777 bp upstream
Tssr91618 transcription start site region 91618 1757 bp upstream
Tssr91619 transcription start site region 91619 346 bp upstream
Tssr91620 transcription start site region 91620 242 bp upstream
Tssr91621 transcription start site region 91621 163 bp upstream
Tssr91622 transcription start site region 91622 101 bp upstream
Tssr91623 transcription start site region 91623 332 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory