rs236846709 SNP Detail

Summary

• ID
  rs236846709
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60112848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACACACC TTTAATCCCA
  GCAGCACTCG GGAGGCAGAA TCAGGCAGAT TTCTGAGTTC GAGACCAGCC TGGTCTACAA
  AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCGAAAA ACCAAAAACC
  AAACCAAACC AAACCAACCA ACCAACCAAA CAAAAAACCC CTAACTACCA CTGTACAAGG
  A
  TCAGGCAGAA GAATTACATG TTCAGAGACT TTCTGGGGAA TTTGGTGACA CCCTCTTTCA
  AAAATAAAGT AAGGAGTGAG CTGGGAGGGT GGGGGGAATG GTGGTGTGCA GCTTGGAGGT
  ACAACACTTG ATATCAAGTA TAATGCCTTG GGTTCAATAC CGGCGACTGC AAACAAAAAT
  CCCTGCTCCC GCCCCCCAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323324666	CHEV_10_59739774	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236846709					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60112848 () rs orientation: forward

Symbol	Name	Function Class
Psap	prosaposin	601 bp upstream
Rr368994	regulatory region 368994	392 bp upstream
Rr432107	regulatory region 432107	111 bp proximal
Rr432108	regulatory region 432108	1062 bp proximal
Tssr93545	transcription start site region 93545	513 bp upstream
Tssr93546	transcription start site region 93546	655 bp upstream
Tssr93547	transcription start site region 93547	676 bp upstream
Tssr93548	transcription start site region 93548	967 bp upstream
Tssr93549	transcription start site region 93549	1451 bp upstream
Tssr93550	transcription start site region 93550	1533 bp upstream
Tssr93551	transcription start site region 93551	1643 bp upstream
Tssr97703	transcription start site region 97703	434 bp downstream