rs236780779 SNP Detail

Summary

• ID
  rs236780779
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105175016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACAAA TGAGAAGCAT
  TTTTTATTAG ATATTTTCTT TATTTACATT TCAAATGTTA TCCCCTTCCC TAGTTCCCCT
  CAGAAAATTC TCTATCTCCT CCCCCTCCGC CTGCTCCCCA ACCTACCCAC TCCTGCTTCT
  TGGCCCTAGC ATTCCCCTAT ACTGGGGCAT AGAGCCTTCA CAGGACCAAG GGCCTCTCCT
  M
  CCATTGATGG CTGACTAGGC CATCCTCTGC TACATATGCA GCTAGAGCCA TGAGACCCAC
  CATGTGTTTT CTTTGATTGG TGGTTTAGTT CCAAGAAGCT CTGGAGGTAC TGGTTAGTTC
  ATATTGTTGT TCCTCCTATG GGGCTGCAAA CCCCTTTAGC TCTTTGGGTA CTTTCTCTAG
  CTCTTTCGTT GGGGACCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243603	CHEV_4_104990424	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236780779					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105175016 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596596	regulatory region 596596	635 bp distal
Rr596597	regulatory region 596597	739 bp distal