rs236764363 SNP Detail

Summary

• ID
  rs236764363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139907502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATTATT ACATAGCTAT
  GGACAAATCT TGAAAACATT ATGCTCACTG AAAGAAGCTA GACACAAAAG GACACCTGTT
  ACATACTTCT ATTTACTTAA ACCGTACAAA ACAGAAAGAT ACATACTAAA CCATGGATCA
  GAAGTTGGGG GAAACTGGAG AAGGGTAAGT AACTGTACTG GGCACAAGAT ATCTGGGGAA
  R
  GTGATAAAAA TTGGTCTGGA ACTAGACAGC AACGACATAC ATACAACTTT TGAATCCTTA
  AAATGAGAGA GGGGGAGAGA GAAGCTTACA ATTTAAGAGG ATTTTGGTAC TGTGTTGATT
  ACACCTCAAT AAGAAAAAAA ATAAAATAAC CAGGGTTGGA AAGACAGCTC GGCAATAAAG
  AGCACTTGCT TCTAGCGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528016	CHEV_2_139891318	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236764363					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139907502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397340	regulatory region 397340			1084 bp upstream
Rr566073	regulatory region 566073			152 bp proximal
Rr566074	regulatory region 566074			253 bp proximal
Rr566075	regulatory region 566075			862 bp proximal
Rr566076	regulatory region 566076			1168 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			243 bp downstream
Tssr26543	transcription start site region 26543			1079 bp downstream