rs236733523 SNP Detail

Summary

• ID
  rs236733523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:125671858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG AGTGTCAGGG GGCGGGGGGG
  R
  GGGGAGGACA ACTGTAGGAA ACCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ
ss914963757	MGP_WTSI_1_125744121	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	A	A	A	A	G	G	G	G	G	G	G	A	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ
rs236733523					SNP	G	G	G	G	G	A	G	A	A	A	A	G	G	G	G	G	G	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914963757	MGP_WTSI_1_125744121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125671858 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	Intron
Rr371980	regulatory region 371980	49 bp upstream