rs236724307 SNP Detail

Summary

• ID
  rs236724307
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153431210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGT TATGATTGAT CGTCTGTCAA
  T
  CTGAAAACAC AAACAACTAG AGATG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321031066	CHEV_3_153388537	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236724307					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153431210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13961	CpG island 13961	75 bp distal
Rr587739	regulatory region 587739	1661 bp distal
Rr587740	regulatory region 587740	410 bp distal
Rr587741	regulatory region 587741	within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	406 bp upstream
Tssr32435	transcription start site region 32435	1660 bp downstream
Tssr36240	transcription start site region 36240	394 bp upstream