rs236698120 SNP Detail

Summary

• ID
  rs236698120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100523557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCCCTG CAGCCCCGCC
  TGCGCGCACG GAGCAGTGGA TTCGCGGGAT TCTGGGCGGG GAGAGGGAGG AGGCGGCTCG
  GCTGTTCCCT CCGCGGCTGA GAGGACTCCG GGTCAAGCCT CCCGGGAGGG TCGGAGGGGG
  CGGGCAGTGG AGGAAGCGGA AAGGGCCCGG CGGGGTGCAG GGTTAGGGCT TACCCCGGGC
  R
  GTCCTGGAGG GTCGGGGCAC TATGGGTACC ACTTTCTTGA AACGGAGGTG AGCTCCTGGG
  GCCTGACAAC CCCTACCCGG TGCCTCCTAG CCCGCCCTGC GTGGGAAACC GGCCTGAAGG
  TGGGAGGCTC AAAGGGGAAG TTTGTGTTAG AGAAAAATTT GCAGTTCTGC GGAGTGGAAT
  GGGGTGGGAA GAGAAACCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392224854	MGP_WTSI_14_100685340	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	A	A	A	G	G	G	A	A	G	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236698120					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	A	A	A	G	G	G	A	A	G	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392224854	MGP_WTSI_14_100685340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100523557 () rs orientation: forward

Symbol	Name	Function Class
Gm41231	predicted gene, 41231	within coordinates
Klf12	Kruppel-like transcription factor 12	Intron
Rr496738	regulatory region 496738	1453 bp distal
Rr496739	regulatory region 496739	within coordinates
Rr496740	regulatory region 496740	446 bp proximal
Tssr126898	transcription start site region 126898	929 bp downstream
Tssr130012	transcription start site region 130012	1899 bp upstream
Tssr130013	transcription start site region 130013	1623 bp upstream
Tssr130014	transcription start site region 130014	1432 bp upstream
Tssr130015	transcription start site region 130015	1393 bp upstream
Tssr130016	transcription start site region 130016	1272 bp upstream
Tssr130017	transcription start site region 130017	1242 bp upstream
Tssr130018	transcription start site region 130018	1179 bp upstream
Tssr130019	transcription start site region 130019	1129 bp upstream